287R |
RB1 |
195 |
1.0 |
stop_gained |
'11/27 |
. |
36 |
Pathogenic
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
SETD2 |
250 |
1.0 |
missense_variant |
'20/21 |
. |
30 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
SETD2 |
250 |
1.0 |
missense_variant |
'20/21 |
. |
30 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
MSH2 |
289 |
0.97 |
frameshift_variant,splice_region_variant |
'3/16 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
CDKN1B |
274 |
0.97 |
frameshift_variant |
'1/3 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
ZMYM3 |
275 |
0.87 |
frameshift_variant |
'2/25 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
LTBP4 |
494 |
0.52 |
missense_variant |
'16/34 |
. |
25.3 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
JAK3 |
509 |
0.52 |
missense_variant |
'3/24 |
1.24E-05 |
23.4 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
SETDB1 |
455 |
0.52 |
missense_variant |
'13/22 |
. |
32 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
TP53 |
425 |
0.52 |
missense_variant |
'4/11 |
4.88E-05 |
15.05 |
Uncertain_significance
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
KCNA5 |
488 |
0.51 |
missense_variant |
'1/1 |
8.13E-06 |
9.002 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
NOTCH3 |
520 |
0.51 |
missense_variant |
'5/33 |
0.0001954 |
23.4 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
NCOR1 |
424 |
0.5 |
missense_variant |
'46/46 |
. |
33 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
NCOR1 |
424 |
0.5 |
missense_variant |
'46/46 |
. |
33 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
CTNNB1 |
573 |
0.49 |
missense_variant |
'3/15 |
. |
25.7 |
Conflicting_interpretations_of_pathogenicity,_other
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
LRP1B |
430 |
0.49 |
missense_variant |
'18/91 |
. |
15.91 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
AXL |
388 |
0.49 |
missense_variant |
'19/20 |
8.12E-06 |
32 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
JAK3 |
336 |
0.49 |
missense_variant |
'2/24 |
0.0005797 |
23.1 |
Uncertain_significance
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
MRE11A |
483 |
0.49 |
missense_variant |
'11/20 |
1.22E-05 |
23.6 |
Uncertain_significance
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
IGF2R |
536 |
0.49 |
missense_variant |
'25/48 |
2.03E-05 |
33 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
LTBP4 |
390 |
0.48 |
missense_variant |
'25/34 |
4.91E-05 |
24.7 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
EPHB2 |
482 |
0.48 |
missense_variant |
'12/16 |
. |
26.3 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
ERF |
574 |
0.48 |
frameshift_variant |
'4/4 |
4.13E-06 |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
UBR4 |
510 |
0.48 |
missense_variant |
'100/106 |
. |
34 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
PRKDC |
474 |
0.48 |
frameshift_variant |
'6/87 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
CDK12 |
397 |
0.48 |
frameshift_variant |
'14/14 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
PRDM1 |
519 |
0.47 |
frameshift_variant |
'5/7 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
PTCH1 |
424 |
0.47 |
frameshift_variant |
'22/24 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
WNK2 |
459 |
0.47 |
missense_variant |
'2/30 |
0.0001138 |
25.3 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
SKI |
462 |
0.47 |
missense_variant |
'5/7 |
. |
15.85 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
APC |
585 |
0.47 |
missense_variant |
'16/16 |
1.22E-05 |
25.8 |
Uncertain_significance
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
LRP1B |
530 |
0.47 |
missense_variant |
'80/91 |
8.17E-06 |
33 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
RAD50 |
526 |
0.47 |
frameshift_variant |
'13/25 |
0.0001362 |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
LHFPL3 |
468 |
0.47 |
missense_variant |
'1/5 |
0.0007676 |
29.4 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
KMT2A |
505 |
0.47 |
frameshift_variant |
'27/36 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
KMT2C |
548 |
0.46 |
missense_variant |
'56/59 |
. |
29 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
PTPN11 |
563 |
0.46 |
missense_variant |
'9/16 |
0.0001909 |
22 |
Benign
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
TSC1 |
581 |
0.45 |
missense_variant |
'17/23 |
. |
33 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
BAX |
516 |
0.45 |
frameshift_variant |
'3/5 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
XIRP2 |
648 |
0.44 |
frameshift_variant |
'9/11 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
LHX3 |
438 |
0.43 |
missense_variant |
'3/6 |
4.22E-06 |
29.9 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
FANCM |
471 |
0.42 |
frameshift_variant |
'14/23 |
3.01E-05 |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
FAM155A |
410 |
0.42 |
missense_variant |
'1/3 |
. |
26.2 |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
BLM |
507 |
0.42 |
frameshift_variant |
'19/22 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
PRKDC |
486 |
0.42 |
inframe_deletion |
'81/87 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
CCAR2 |
428 |
0.41 |
frameshift_variant |
'12/21 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |
287R |
MAN1A1 |
474 |
0.41 |
frameshift_variant |
'11/13 |
. |
. |
-
|
Targeted Twist Panel |
MURAL Prostate Cancer PDX collection |
hg19 |
paired |
NextSeq 500 |